Changes
On May 8, 2023, 11:42:20 AM UTC,
Andreas Jahn:
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Updated description of resource Naomi Output ZIP in Malawi HIV Estimates 2023 from
Naomi output uploaded from Naomi web app Area scope - MWI Area level - 5 Calendar quarter to generate estimates - CY2022Q4 Calendar quarter to generate short-term projection - CY2023Q4
to2023-05-05: Refitted Naomi after bug-fix to Shiny90 and Naomi, deployed by Jeff Eaton. Previous fit resulted in estimates for awareness >100% from 2022-2030. Area scope - MWI Area level - 5 Calendar quarter to generate estimates - CY2022Q4 Calendar quarter to generate short-term projection - CY2023Q4
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Added field
fork_synced
to resource Naomi Output ZIP in Malawi HIV Estimates 2023
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| 217 | "restricted_allowed_orgs": "unaids", | 217 | "restricted_allowed_orgs": "unaids", | ||
| 218 | "schema": "3_geojson_inputs", | 218 | "schema": "3_geojson_inputs", | ||
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| 222 | "state": "active", | 222 | "state": "active", | ||
| 223 | "url": | 223 | "url": | ||
| 224 | urce/58ab5b07-1a46-4b19-a43b-243924c163e8/download/mwi_areas.geojson", | 224 | urce/58ab5b07-1a46-4b19-a43b-243924c163e8/download/mwi_areas.geojson", | ||
| 225 | "url_type": "upload", | 225 | "url_type": "upload", | ||
| 226 | "validate_package": "true", | 226 | "validate_package": "true", | ||
| 227 | "validation_status": "success", | 227 | "validation_status": "success", | ||
| 228 | "validation_timestamp": "2022-12-16T08:18:17.347942" | 228 | "validation_timestamp": "2022-12-16T08:18:17.347942" | ||
| 229 | }, | 229 | }, | ||
| 230 | { | 230 | { | ||
| 231 | "cache_last_updated": null, | 231 | "cache_last_updated": null, | ||
| 232 | "cache_url": null, | 232 | "cache_url": null, | ||
| 233 | "created": "2022-11-18T09:47:29.247973", | 233 | "created": "2022-11-18T09:47:29.247973", | ||
| 234 | "datastore_active": false, | 234 | "datastore_active": false, | ||
| 235 | "description": "Updated AIM > Program Data > PMTCT for 2013-2022 | 235 | "description": "Updated AIM > Program Data > PMTCT for 2013-2022 | ||
| 236 | number of women on ART before and during pregnancy (3 \r\ngroups) with | 236 | number of women on ART before and during pregnancy (3 \r\ngroups) with | ||
| 237 | DHA-MIS ANC cohort reports of women completing ANC in the reporting | 237 | DHA-MIS ANC cohort reports of women completing ANC in the reporting | ||
| 238 | period (outcomes 6 months after starting ANC). Updated \"Option B\" | 238 | period (outcomes 6 months after starting ANC). Updated \"Option B\" | ||
| 239 | postnatal maternal prophylaxis 2013-2022 with DHA-MIS quarterly ART | 239 | postnatal maternal prophylaxis 2013-2022 with DHA-MIS quarterly ART | ||
| 240 | program reports (reason for starting ART: breastfeeding), adjusted for | 240 | program reports (reason for starting ART: breastfeeding), adjusted for | ||
| 241 | double-counting of women who transferred out based on the 12-month ART | 241 | double-counting of women who transferred out based on the 12-month ART | ||
| 242 | cohort survival analysis for women started under Option B+. Updated | 242 | cohort survival analysis for women started under Option B+. Updated | ||
| 243 | ANC testing data 2013-2022 from DHA-MIS ANC cohort reports. All | 243 | ANC testing data 2013-2022 from DHA-MIS ANC cohort reports. All | ||
| 244 | program data for 2022 now complete. Reduced all ANC ART and ANC | 244 | program data for 2022 now complete. Reduced all ANC ART and ANC | ||
| 245 | testing data by 5% for presumed double-counting in routine ANC reports | 245 | testing data by 5% for presumed double-counting in routine ANC reports | ||
| 246 | due to some women who attend more than one ANC clinic during the | 246 | due to some women who attend more than one ANC clinic during the | ||
| 247 | pregnancy.\r\nUpdated AIM > Program Data > child treatment and Adult | 247 | pregnancy.\r\nUpdated AIM > Program Data > child treatment and Adult | ||
| 248 | ART coverage forecast 2023-2030 to achieve a smooth scale-up from 2022 | 248 | ART coverage forecast 2023-2030 to achieve a smooth scale-up from 2022 | ||
| 249 | estimated coverage levels. Updated AIM > Program Data > Viral | 249 | estimated coverage levels. Updated AIM > Program Data > Viral | ||
| 250 | Suppression with updated stats from LIMS VL data export (12 Jan 2023) | 250 | Suppression with updated stats from LIMS VL data export (12 Jan 2023) | ||
| 251 | Collapsed the 3 region EPP subpopulations into one single national | 251 | Collapsed the 3 region EPP subpopulations into one single national | ||
| 252 | subpopulation and refitted EPP using Tim Brown's modified EPP module | 252 | subpopulation and refitted EPP using Tim Brown's modified EPP module | ||
| 253 | (the default AIM 6.24 did not converge with the default likelihood | 253 | (the default AIM 6.24 did not converge with the default likelihood | ||
| 254 | offset of 300). Re-fitted EPP with likelihood offset of 600 resulting | 254 | offset of 300). Re-fitted EPP with likelihood offset of 600 resulting | ||
| 255 | in an excellent fit with survey and surveillance prevalence data. | 255 | in an excellent fit with survey and surveillance prevalence data. | ||
| 256 | Re-fitted the sex IRR for time-varying HIV prevalence data without the | 256 | Re-fitted the sex IRR for time-varying HIV prevalence data without the | ||
| 257 | 2015MDHS as age-specific and subnational prevalence trends were | 257 | 2015MDHS as age-specific and subnational prevalence trends were | ||
| 258 | implausible and affected the fit to 2020MPHIA.\r\n2023-05-05: Imported | 258 | implausible and affected the fit to 2020MPHIA.\r\n2023-05-05: Imported | ||
| 259 | re-fitted Shiny90 estimates after bug-fix applied by Jeff to remove | 259 | re-fitted Shiny90 estimates after bug-fix applied by Jeff to remove | ||
| 260 | excessively high estimates for aware for 2022-2030.", | 260 | excessively high estimates for aware for 2022-2030.", | ||
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| 283 | "url_type": "upload" | 283 | "url_type": "upload" | ||
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| 287 | "cache_url": null, | 287 | "cache_url": null, | ||
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| 299 | "mimetype_inner": null, | 299 | "mimetype_inner": null, | ||
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| 312 | "url_type": "upload", | 312 | "url_type": "upload", | ||
| 313 | "validation_status": "success", | 313 | "validation_status": "success", | ||
| 314 | "validation_timestamp": "2022-12-16T08:18:23.559144" | 314 | "validation_timestamp": "2022-12-16T08:18:23.559144" | ||
| 315 | }, | 315 | }, | ||
| 316 | { | 316 | { | ||
| 317 | "cache_last_updated": null, | 317 | "cache_last_updated": null, | ||
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| 319 | "created": "2022-11-18T09:49:51.616558", | 319 | "created": "2022-11-18T09:49:51.616558", | ||
| 320 | "datastore_active": true, | 320 | "datastore_active": true, | ||
| 321 | "description": "Complete testing program data from Q1-Q4 2022 | 321 | "description": "Complete testing program data from Q1-Q4 2022 | ||
| 322 | (HTS and ANC); removed confirmatory testing data from HTS.", | 322 | (HTS and ANC); removed confirmatory testing data from HTS.", | ||
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| 332 | "mimetype_inner": null, | 332 | "mimetype_inner": null, | ||
| 333 | "name": "Shiny90 HIV Testing Data", | 333 | "name": "Shiny90 HIV Testing Data", | ||
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| 342 | "size": 1254, | 342 | "size": 1254, | ||
| 343 | "state": "active", | 343 | "state": "active", | ||
| 344 | "url": | 344 | "url": | ||
| 345 | 4f2be1e243/download/shiny90-program-data_mwi_0_malawi_2023_04_27.csv", | 345 | 4f2be1e243/download/shiny90-program-data_mwi_0_malawi_2023_04_27.csv", | ||
| 346 | "url_type": "upload", | 346 | "url_type": "upload", | ||
| 347 | "validation_status": "success", | 347 | "validation_status": "success", | ||
| 348 | "validation_timestamp": "2023-04-27T10:09:33.429946" | 348 | "validation_timestamp": "2023-04-27T10:09:33.429946" | ||
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| 350 | { | 350 | { | ||
| 351 | "cache_last_updated": null, | 351 | "cache_last_updated": null, | ||
| 352 | "cache_url": null, | 352 | "cache_url": null, | ||
| 353 | "created": "2022-12-12T13:22:42.424376", | 353 | "created": "2022-12-12T13:22:42.424376", | ||
| 354 | "datastore_active": false, | 354 | "datastore_active": false, | ||
| 355 | "description": "Updated KP workbook with added FSW, MSM, TG and | 355 | "description": "Updated KP workbook with added FSW, MSM, TG and | ||
| 356 | PWID size estimates for 7 districts from 2021 FHI360 survey. However, | 356 | PWID size estimates for 7 districts from 2021 FHI360 survey. However, | ||
| 357 | none of these new PSE have been considered in the consensus estimates | 357 | none of these new PSE have been considered in the consensus estimates | ||
| 358 | due to quality concerns about the survey (implementation disrupted by | 358 | due to quality concerns about the survey (implementation disrupted by | ||
| 359 | COVID-19).", | 359 | COVID-19).", | ||
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| 383 | "url_type": "upload" | 383 | "url_type": "upload" | ||
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| 413 | { | 413 | { | ||
| 414 | "cache_last_updated": null, | 414 | "cache_last_updated": null, | ||
| 415 | "cache_url": null, | 415 | "cache_url": null, | ||
| 416 | "created": "2022-12-16T08:16:34.618360", | 416 | "created": "2022-12-16T08:16:34.618360", | ||
| 417 | "datastore_active": false, | 417 | "datastore_active": false, | ||
| n | 418 | "description": "Naomi output uploaded from Naomi web app\n\nArea | n | 418 | "description": "2023-05-05: Refitted Naomi after bug-fix to |
| 419 | Shiny90 and Naomi, deployed by Jeff Eaton. Previous fit resulted in | ||||
| 420 | estimates for awareness >100% from 2022-2030.\r\n\r\nArea scope - | ||||
| 419 | scope - MWI\nArea level - 5\nCalendar quarter to generate estimates - | 421 | MWI\r\nArea level - 5\r\nCalendar quarter to generate estimates - | ||
| 420 | CY2022Q4\nCalendar quarter to generate short-term projection - | 422 | CY2022Q4\r\nCalendar quarter to generate short-term projection - | ||
| 421 | CY2023Q4", | 423 | CY2023Q4", | ||
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| 478 | "url_type": "upload" | 481 | "url_type": "upload" | ||
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| 480 | { | 483 | { | ||
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| 482 | "cache_url": null, | 485 | "cache_url": null, | ||
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| 484 | "datastore_active": false, | 487 | "datastore_active": false, | ||
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| 487 | estimates - CY2022Q4\nCalendar quarter to generate short-term | 490 | estimates - CY2022Q4\nCalendar quarter to generate short-term | ||
| 488 | projection - CY2023Q4", | 491 | projection - CY2023Q4", | ||
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| 490 | "fork_resource": "", | 493 | "fork_resource": "", | ||
| 491 | "format": "HTML", | 494 | "format": "HTML", | ||
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| 498 | "mimetype_inner": null, | 501 | "mimetype_inner": null, | ||
| 499 | "name": "Naomi Comparison Report", | 502 | "name": "Naomi Comparison Report", | ||
| 500 | "package_id": "8263d504-2259-4302-80db-02e3d0fa1cf8", | 503 | "package_id": "8263d504-2259-4302-80db-02e3d0fa1cf8", | ||
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| 514 | "cache_last_updated": null, | 517 | "cache_last_updated": null, | ||
| 515 | "cache_url": null, | 518 | "cache_url": null, | ||
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| 519 | data up to Dec 2022", | 522 | data up to Dec 2022", | ||
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| 521 | "fork_resource": "", | 524 | "fork_resource": "", | ||
| 522 | "format": "ZIP", | 525 | "format": "ZIP", | ||
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| 526 | "lfs_prefix": "malawi-moh/malawi-country-estimates-2023", | 529 | "lfs_prefix": "malawi-moh/malawi-country-estimates-2023", | ||
| 527 | "metadata_modified": "2023-05-04T14:15:22.911252", | 530 | "metadata_modified": "2023-05-04T14:15:22.911252", | ||
| 528 | "mimetype": null, | 531 | "mimetype": null, | ||
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| 530 | "name": "Shiny 90 Output ZIP", | 533 | "name": "Shiny 90 Output ZIP", | ||
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| 536 | "sha256": | 539 | "sha256": | ||
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| 545 | "state": "active", | 548 | "state": "active", | ||
| 546 | "tags": [], | 549 | "tags": [], | ||
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| 548 | "type": "country-estimates-23", | 551 | "type": "country-estimates-23", | ||
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| 550 | "url": null, | 553 | "url": null, | ||
| 551 | "version": null, | 554 | "version": null, | ||
| 552 | "year": "2023" | 555 | "year": "2023" | ||
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